[1] | Koshland, D. E. (1958) Application of a Theory of Enzyme Specificity to Protein Synthesis. Proc Natl Acad Sci USA 44(2): 98-104. |
[2] | Berzofsky, J. A. (1985) Intrinsic and extrinsic factors in protein antigenic structure. Science 229(4717): 932-940. |
[3] | Chothia C, Janin J (1975) Principles of protein-protein recognition. Nature 256:705-708. |
[4] | Lo Conte L, Chothia C, Janin J (1999) The atomic structure of protein-protein recognition sites. J Mol Biol. 285(5):2177-2198. |
[5] | Li N, Sun Z, Jiang F (2008) Prediction of protein-protein binding site by using core interface residue and support vector machine. BMC Bioinformatics 9:553. |
[6] | Kim SW, Cha SS, Cho HS, Kim JS, Ha NC, Cho MJ, Joo S, Kim KK, Choi KY, Oh BH (1997) High-resolution crystal structures of delta5-3-ketosteroid isomerase with and without a reaction intermediate analogue. Biochemistry 36(46): 14030-6. |
[7] | Zhao Q, Abeygunawardana C, Mildvan AS (1997) NMR studies of the secondary structure in solution and the steroid binding site of delta5-3-ketosteroid isomerase in complexes with diamagnetic and paramagnetic steroids. Biochemistry 36(12): 3458-72. |
[8] | Barth A, Zscherp C (2000) Substrate binding and enzyme function investigated by infrared spectroscopy. FEBS Lett 477(3): 151-156. |
[9] | Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, Weissig H, Shindyalov IN, Bourne PE (2000) The Protein Data Bank. Nucleic Acids Res 28(1): 235-242. |
[10] | Petros AM., Mueller L, Kopple KD (1990) NMR identification of protein surfaces using paramagnetic probes. Biochemistry 29(43): 10041-10048. |
[11] | Moore CD, Lecomte JT (1993) Characterization of an independent structural unit in apocytochrome b5. Biochemistry 32(1): 199-207. |
[12] | Bruice TC (2002) A view at the milllenium: the efficiency of enzymatic catalysis. Accounts of chemical Research 35(3): 139-148. |
[13] | Kraut DA., Sigala PA, Pybus B, Liu CW, Ringe D, Petsko GA, Herschlag D (2006) Testing electrostatic complementarity in enzyme catalysis: hydrogen bonding in the ketosteroid isomerase oxyanion hole. PLoS Biol 4(4): e99. |
[14] | Batzold FH, Benson AM, Robinson CH, Talalay P (1976) The delta 5-3-ketosteroid isomerase reaction: catalytic mechanism, specificity and inhibition. Adv Enzyme Regul 14: 243-267. |
[15] | Hawkinson, DC., Eames TC, Pollack RM (1991) Energetics of 3-oxo-delta 5-steroid isomerase: source of the catalytic power of the enzyme. Biochemistry 30(45): 10849-10858. |
[16] | Hawkinson DC, Pollack RM, Ambulos NP Jr (1994) Evaluation of the internal equilibrium constant for 3-oxo-delta 5-steroid isomerase using the D38E and D38N mutants: the energetic basis for catalysis. Biochemistry 33(40): 12172-12183. |
[17] | Wu ZR, Ebrahimian S, Zawrotny ME, Thornburg LD, Perez-Alvarado GC, Brothers P, Pollack RM, Summers MF (1997) Solution structure of 3-oxo-Δ5-3-steroid isomerase, Science 276:415-418. |
[18] | Choi, G., Ha NC, Kim SW, Kim DH, Park S, Oh BH, Choi KY (2000) Asp-99 donates a hydrogen bond not to Tyr-14 but to the steroid directly in the catalytic mechanism of Delta 5-3-ketosteroid isomerase from Pseudomonas putida biotype B. Biochemistry 39(5): 903-909. |
[19] | Marion D, Driscoll PC, Kay LE, Winqfield PT, Bax A, Gronenborn AM, Clore GM (1989) overcoming the overlap problem in the assignment of 1H NMR spectra of larger proteins by use of three-dimensional heteronuclear 1H-15N Hartmann-Hahn multiple quantum coherence and nuclear overhauser-multiple quantum coherence spectroscopy: application to interleukin 1 beta. Biochemistry 28:6150-6156 |
[20] | Wishart DS, Biqam CG, Yao J, Abildqaard F, Dyson HJ, Oldfield E, Markley JL, Sykes BD (1995) 1H, 13C and 15N chemical shift referencing in biomolecular NMR. J. Biomol. NMR. 6(2):135-140 |
[21] | Delaqlio F, Grzesiek S, Vuister GW, Zhu G, Pfeifer J, Bax A (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J Biomol. NMR. 6(3):277-293 |
[22] | Goddard TD, Kneller DG Sparky3 University of california, San Fransisco |
[23] | Esposito G, Lesk AM, Molinari H, Motta A, Niccolai N, Pastore A (1992) Probing protein structure by solvent perturbation of nuclear magnetic resonance spectra. Nuclear magnetic resonance spectral editing and topological mapping in proteins by paramagnetic relaxation filtering. J. Mol. Biol. 224(3):659-670 |
[24] | Cocco MJ, Lecomte JT (1994) the native state of apomyoglobin described by proton NMR spectroscopy: interaction with the paramagnetic probe HyTEMPO and the fluorescent dye ANS. Protein Sci. 3(2)267-281 |
[25] | Jang DS, Cha HJ, Cha SS, Hong BH, Ha NC, Lee JY, Oh BH, Lee HS, Choi KY (2004) structural double-mutant cycle analysis of a hydrogen bond network in ketosteroid isomerase from Pseudomonas putida biotype B. Biochem. J. 382:967-973 |
[26] | Groger C, Moqlich A, Pons M, Koch B, Hengstenberg W, Kalbitzer HR, Brunner E (2003) NMR-spectroscopic mapping of an engineered cavity in the I14A mutant of HPr from Staphylococcus carnosus using xenon. J. Am. Chem. Soc. 125:8726-8727 |
[27] | Cho HS, Ha NC, Choi G, Kim HJ, Lee D, Oh KS, Kim KS, Lee WT, Choi KY, Oh BH (1999) crystal structure of delta5-3-ketosteroid isomerase from Pseudomonas testosteroni in complex with equilenin settles the correct Hydrogen bonding scheme for transition state stabilization J. Biol. Chem..274:32863-32866 |
[28] | Hawkinson DC, Pollack RM, Ambulos Jr NP (1994) evaluation of the internal equilibrium constant for 3-oxo-delta 5-steroid isomerase using the D38E and D38N mutants: the energetic basis for catalysis Biochemistry 33:12172-12183 |
[29] | Pollack RM (2004) Enzymatic mechanisms for catalysis of enolization: ketosteroid isomerase Bioorg. Chem. 32:341-353 |