[1] | Lu Y, Okubo T, Rawlins E, Hogan BL. Epithelial progenitor cells of the embryonic lung and the role of microRNAs in their proliferation. Proceedings of the American Thoracic Society. 2008; 5(3): 300-4. |
[2] | Green MD, Huang SX, Snoeck HW. Stem cells of the respiratory system: from identification to differentiation into functional epithelium. BioEssays: news and reviews in molecular, cellular and developmental biology. 2013; 35(3): 261-70. |
[3] | Saleh MM, Alzohairy, A. M., Mohamed, O. A., & Alsayed, G. H.. A Comprehensive Study by Using Different Alignment Algorithms to Demonstrate the Genetic Evolution of Heat Shock Factor 1 (HSF1) in Different Eukaryotic Organisms. progressive. (2013); 3((2)). |
[4] | Babaie Y, Herwig R, Greber B, Brink TC, Wruck W, Groth D, et al. Analysis of Oct4-dependent transcriptional networks regulating self-renewal and pluripotency in human embryonic stem cells. Stem Cells. 2007; 25(2): 500-10. |
[5] | Grifone R, Laclef C, Spitz F, Lopez S, Demignon J, Guidotti JE, et al. Six1 and Eya1 expression can reprogram adult muscle from the slow-twitch phenotype into the fast-twitch phenotype. Mol Cell Biol. 2004; 24(14): 6253-67. |
[6] | Xu PX, Woo I, Her H, Beier DR, Maas RL. Mouse Eya homologues of the Drosophila eyes absent gene require Pax6 for expression in lens and nasal placode. Development. 1997; 124(1): 219-31. |
[7] | Xu PX, Cheng J, Epstein JA, Maas RL. Mouse Eya genes are expressed during limb tendon development and encode a transcriptional activation function. Proceedings of the National Academy of Sciences of the United States of America. 1997; 94(22): 11974-9. |
[8] | Ford HL, Kabingu EN, Bump EA, Mutter GL, Pardee AB. Abrogation of the G2 cell cycle checkpoint associated with overexpression of HSIX1: a possible mechanism of breast carcinogenesis. Proceedings of the National Academy of Sciences of the United States of America. 1998; 95(21): 12608-13. |
[9] | Coletta RD, Christensen K, Reichenberger KJ, Lamb J, Micomonaco D, Huang L, et al. The Six1 homeoprotein stimulates tumorigenesis by reactivation of cyclin A1. Proceedings of the National Academy of Sciences of the United States of America. 2004; 101(17): 6478-83. |
[10] | Jemc J, Rebay I. The eyes absent family of phosphotyrosine phosphatases: properties and roles in developmental regulation of transcription. Annual review of biochemistry. 2007; 76: 513-38. |
[11] | Li X, Oghi KA, Zhang J, Krones A, Bush KT, Glass CK, et al. Eya protein phosphatase activity regulates Six1-Dach-Eya transcriptional effects in mammalian organogenesis. Nature. 2003; 426(6964): 247-54. |
[12] | Eliasz S, Liang S, Chen Y, De Marco MA, Machek O, Skucha S, et al. Notch-1 stimulates survival of lung adenocarcinoma cells during hypoxia by activating the IGF-1R pathway. Oncogene. 2010; 29(17): 2488-98. |
[13] | Chen Y, Li D, Liu H, Xu H, Zheng H, Qian F, et al. Notch-1 signaling facilitates survivin expression in human non-small cell lung cancer cells. Cancer biology & therapy. 2011; 11(1): 14-21. |
[14] | Laclef C, Hamard G, Demignon J, Souil E, Houbron C, Maire P. Altered myogenesis in Six1-deficient mice. Development. 2003; 130(10): 2239-52. |
[15] | Fujimoto Y, Tanaka SS, Yamaguchi YL, Kobayashi H, Kuroki S, Tachibana M, et al. Homeoproteins Six1 and Six4 regulate male sex determination and mouse gonadal development. Developmental cell. 2013; 26(4): 416-30. |
[16] | Ahmed M, Xu J, Xu PX. EYA1 and SIX1 drive the neuronal developmental program in cooperation with the SWI/SNF chromatin-remodeling complex and SOX2 in the mammalian inner ear. Development. 2012; 139(11): 1965-77. |
[17] | Rockich BE, Hrycaj SM, Shih HP, Nagy MS, Ferguson MA, Kopp JL, et al. Sox9 plays multiple roles in the lung epithelium during branching morphogenesis. Proceedings of the National Academy of Sciences of the United States of America. 2013; 110(47): E4456-64. |
[18] | Turcatel G, Rubin N, Menke DB, Martin G, Shi W, Warburton D. Lung mesenchymal expression of Sox9 plays a critical role in tracheal development. BMC biology. 2013; 11: 117. |
[19] | Matheu A, Collado M, Wise C, Manterola L, Cekaite L, Tye AJ, et al. Oncogenicity of the developmental transcription factor Sox9. Cancer research. 2012; 72(5): 1301-15. |
[20] | Wang L, He S, Yuan J, Mao X, Cao Y, Zong J, et al. Oncogenic role of SOX9 expression in human malignant glioma. Med Oncol. 2012; 29(5): 3484-90. |
[21] | Jiang SS, Fang WT, Hou YH, Huang SF, Yen BL, Chang JL, et al. Upregulation of SOX9 in lung adenocarcinoma and its involvement in the regulation of cell growth and tumorigenicity. Clinical cancer research: an official journal of the American Association for Cancer Research. 2010; 16(17): 4363-73. |
[22] | Perl AK, Wert SE, Loudy DE, Shan Z, Blair PA, Whitsett JA. Conditional recombination reveals distinct subsets of epithelial cells in trachea, bronchi, and alveoli. American journal of respiratory cell and molecular biology. 2005; 33(5): 455-62. |
[23] | Liu Y, Hogan BL. Differential gene expression in the distal tip endoderm of the embryonic mouse lung. Gene expression patterns: GEP. 2002; 2(3-4): 229-33. |
[24] | Kataoka F, Umeyama, N., Nishijima, T., Tonegawa, H., Susaki, S., Okamoto, H., ... & Tanaka, K. . U.S. Patent Application No. 29/559,489. (2017). |
[25] | Ahmed M. Alzohairy GG, Mohamed F. Ramadan, Sherif Edris, J.S.M. Sabir, Robert K. Jansen, Ahmed Bahieldin. . Retrotransposon-based molecular markers for assessment of genomic diversity. Functional Plant Biology. (2014); 41(8) 781-789 ((IF: 2.471).). |
[26] | Mansour A JATdS, Gábor Gyulai . Assessment of molecular (dis)similarity: The role of multiple sequence alignments (MSA) programs in biological research. Genes, genomes and genomics 2009; (Special Issue 1): 23-30 ((Print ISSN 1749-0383) (Bioinformatics SI).). |
[27] | Tamura K, Stecher G, Peterson D, Filipski A, Kumar S. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Mol Biol Evol. 2013; 30(12): 2725-9. |
[28] | Mansour.M.A. Phylip and Phylogenetics (Research note) Genes, genomes and genomics. (Bioinformatics SI). 2009; (Volume 3, 2009) ( (Special Issue 1): 46-49): (Print ISSN 1749-0383). |
[29] | Chothia C. Proteins. One thousand families for the molecular biologist. Nature. 1992; 357(6379): 543-4. |
[30] | Ghelis C, Yon JM. [Conformational coupling between structural units. A decisive step in the functional structure formation]. Comptes rendus des seances de l'Academie des sciences Serie D, Sciences naturelles. 1979; 289(2): 197-9. |
[31] | Black DL. Mechanisms of alternative pre-messenger RNA splicing. Annual review of biochemistry. 2003; 72: 291-336. |
[32] | Pan Q, Shai O, Lee LJ, Frey BJ, Blencowe BJ. Deep surveying of alternative splicing complexity in the human transcriptome by high-throughput sequencing. Nature genetics. 2008; 40(12): 1413-5. |
[33] | Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, et al. STRING v9. 1: protein-protein interaction networks, with increased coverage and integration. Nucleic acids research. 2013; 41(D1): D808-D15. |
[34] | Szklarczyk D, Franceschini A, Wyder S, Forslund K, Heller D, Huerta-Cepas J, et al. STRING v10: protein–protein interaction networks, integrated over the tree of life. Nucleic acids research. 2014:gku1003. |
[35] | Boucher CA, Carey N, Edwards YH, Siciliano MJ, Johnson KJ. Cloning of the human SIX1 gene and its assignment to chromosome 14. Genomics. 1996; 33(1): 140-2. |
[36] | Grifone R, Demignon J, Houbron C, Souil E, Niro C, Seller MJ, et al. Six1 and Six4 homeoproteins are required for Pax3 and Mrf expression during myogenesis in the mouse embryo. Development. 2005; 132(9): 2235-49. |
[37] | Saitou N, Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987; 4(4): 406-25. |
[38] | Pauling ZEa. Evolutionary divergence and convergence in proteins. Edited in Evolving Genes and Proteins by Baryon and H.Q. Vogel. Academic Press, New York. (1965);, PP. 97-166. |
[39] | Brohee S, Van Helden J. Evaluation of clustering algorithms for protein-protein interaction networks. BMC bioinformatics. 2006; 7(1): 1. |