[1] | Alexandrov NN, Brover VV, Freidin S, et al. 2009. Insights into corn genes derived from large-scale cDNASequencing, Plant Mol Biol vol 69, pp 179–94. |
[2] | Arumuganathan, Earle ED. 1991. Estimation of nuclear DNA content of plants by flow cytometry. Plant Molecular Biology Reporter vol 9, pp 229-241. |
[3] | Braun HJ, Atlin G, Payne T. 2010. Multi location testing as a tool to identify plant response to global climate change. In, pp Reynolds, C.R.P. (Ed.), Climate Change and Crop Production. CABI: London, UK. |
[4] | Brenchley R, Spannagl M, Pfeifer M, Barker GL, D'Amore R, et al. 2012. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature vol 491, pp 705–710. |
[5] | Cai H, Tian S, Dong H. 2012. Large scale in silico identification of MYB family genes from wheat expressed sequence tags. Mol Biotechnol vol 52, pp 184-92. |
[6] | Chen K, Gao C. 2013. TALENs: Customizable Molecular DNA Scissors for Genome Engineering of Plants. J Genet Genomics vol 40, pp 271-9. |
[7] | Conesa A, Go¨tz S. 2008, Blast2GO: A comprehensive suite for functional analysis in plant genomics. Int J Plant Genomics vol 2008, pp 619832. |
[8] | Cong L, Ran FA, Cox D, Lin S, Barretto R, et al. 2013. Multiplex genome engineering using CRISPR/Cas systems. Science vol 339:819-23. |
[9] | Duggan DJ, Bittner M, Chen Y, Meltzer P, Trent JM. 1999. Expression profiling using cDNA microarrays. Nat Genet vol 21, pp 10–4. |
[10] | Ewing B, Hillier L, Wendl MC, Green P. 1998. Base-calling of automated sequencer traces using phred I. Accuracy assessment. Genome Res vol 8, pp 175–185. |
[11] | Ewing RM, Kahla AB, Poirot O, Lopez F, Audic S, Claver JM. 1999. Large-scale statistical analyses of rice ESTs reveal correlated patterns of gene expression. Genome Res vol 9, pp 950–9. |
[12] | Fu Y, Foden JA, Khayter C, Maeder ML, Reyon D, et al. 2013. High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nature Biotechnology; doi:10.1038/nbt.2623. |
[13] | Fulton TM, Hoeven R, Eannetta NT, Tanksley SD. 2002. Identification, analysis, and utilization of conserved ortholog set markers for comparative genomics in higher plants, Plant Cell vol 14, pp 1457–67. |
[14] | Gasiunas G, Barrangou R, Horvath P, Siksnys V. 2012. Cas9-crRNA ribonucleoprotein complex mediates specific DNA cleavage for adaptive immunity in bacteria. Proc Natl Acad Sci USA vol 109, pp E 2579–E 2586. |
[15] | Gene Ontology Consortium: 2006. The Gene Ontology (GO) project in 2006. Nucleic Acids Res vol 34(Database issue), pp D322–D6. |
[16] | Huang X, Madan A. 1999. CAP3: A DNA sequence assembly program. Genome Res vol 9, pp 868. |
[17] | Hughes, A. and Friedman, R. 2004. Expression patterns of duplicate genes in the developing root in Arabidopsis thaliana. Mol Evol vol 60, pp 247–56. |
[18] | Jia J, Zhao S, Kong X, Li Y, Zhao G, et al. 2013. Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation. Nature vol 496, pp 91–95. |
[19] | Jore MM, Lundgren M, Duijn EV, Bultema JB, Westra ER, et al. 2011. Structural basis for CRISPR RNA-guided DNA recognition by Cascade. Nat Struct Mol Biol vol 18, pp 529–536. |
[20] | Kanehisa M, Goto S. 2000. KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res vol 28, pp 27–30. |
[21] | Katiyar A, Smita S, Lenka SK, Rajwanshi R, Chinnusamy V, Bansal KC. 2012. Genome-wide classification and expression analysis of MYB transcription factor families in rice and Arabidopsis. BMC Genomics vol 13, pp 544. |
[22] | Kikuchi S, Sathoh K, Nagata T, et al. 2003. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice, Science vol 301, pp 376. |
[23] | Li L, Wang J, Guo Y, Jiang F, Xu Y, et al. 2008. Development of SSR markers from ESTs of gramineous species and their chromosome location on wheat. Progress in Natural Science vol 18, pp 1485–1490. |
[24] | Ling HQ, Zhao S, Liu D, Wang J, Sun H, Zhang C, et al. 2013. Draft genome of the wheat A-genome progenitor Triticum urartu. Nature vol 496, pp 87–90. |
[25] | Mali P, Yang L, Esvelt KM, Aach J, Guell M, et al. 2013. RNA-guided human genome engineering via Cas9. Science vol 339, pp 823-6. |
[26] | Manickavelu A, Kawaura K, Oishi K, Shin T, Kohara Y, et al. 2012. Comprehensive Functional Analyses of Expressed Sequence Tags in Common Wheat (Triticum aestivum) DNA Research vol 19, pp 165–177. |
[27] | Perez-Rodriguez P, Riano-Pachon DM, Correa LGG, Rensing SA, Kersten B, Mueller-Roeber B. 2009. PlnTFDB: updated content and new features of the plant transcription factor database. Nucleic Acids Res;doi: 10.1093/nar/gkp805. |
[28] | Pré M, Atallah M, Champion A, Vos MD, Pieterse CMJ, Memelink J. 2008. The AP2/ERF Domain Transcription Factor ORA59 Integrates Jasmonic Acid and Ethylene Signals in Plant Defense. Plant Physiology vol 147, pp 1347-1357. |
[29] | Raboy V. 2009. Approaches and challenges to engineering seed phytate and total phosphorus. Plant Science vol 177, pp 281–296. |
[30] | Raboy V. 2003. Myo-Inositol-1,2,3,4,5,6-hexakisphosphate. Phytochemistry vol 64, pp 1033–1043. |
[31] | Raboy V. 2001. Seeds for a better future: ‘low phytate’ grains help to overcome malnutrition and reduce pollution. Trends Plant Sci vol 6, pp 458–462. |
[32] | Ronning CM, Stegalkina SS, Ascenzi RA, et al. 2003. Comparative analyses of potato expressed sequence tag libraries. Plant Physiol vol 131, pp 419–29. |
[33] | Rosegrant MW, Agcaoili M. 2010. Global Food Demand, Supply, and Price Prospects to 2010. International Food Policy Research Institute: Washington, DC.. |
[34] | Rota ML, Kantety RV, Yu JK, Sorrells ME. 2005. Nonrandom distribution and frequencies of genomic and EST-derived microsatellite markers in rice, wheat, and barley. BMC Genomics vol 6, pp 23 doi:10.1186/1471-2164-6-23 |
[35] | Schlueter JA, Dixon P, Granger C, et al. 2004. Mining EST databases to resolve evolutionary events in major crop species. Genome vol 47, pp 868–76. |
[36] | Shukla VK, Doyon Y, Miller JC, Moehle EA, Worden SE, et al. 2009. Precise genome modification in the crop species Zea mays using zinc-finger nucleases.; 459:doi:10.1038/nature 07992. |
[37] | Somers DJ, Kirkpatrick R, Moniwa M, Walsh A. 2003 Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. Genome, vol 49, pp 431–7. |
[38] | Stevenson-Paulik J, Bastidas RJ, Chiou ST, Frye RA. 2005. Generation of phytate-free seeds in Arabidopsis through disruption of inositol polyphosphate kinases. Proc. Natl Acad. Sci. USA vol 102, pp 12612–12617. |
[39] | Upadhyay SK, Kumar J, Alok A, Tuli R. 2013. RNA guided genome editing for multiple target gene mutations in wheat. G3 (Bethesda). vol 3, pp 2233-8. |
[40] | Wilson ID, Barker GLA, Beswick RW, et al. 2004. A transcriptomics resource for wheat functional genomics, Plant Biotech vol 2, pp 495–506. |
[41] | Zhang D, Choi DW, Wanamaker S, et al. 2004. Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.). Genetics vol 168, pp 595–608. |
[42] | Zhang F, Maeder ML, Unger-Wallace E, Hoshaw JP, Reyon D, et al. 2010. High frequency targeted mutagenesis in Arabidopsis thaliana using zinc finger nucleases. Proc Natl Acad Sci USA vol 107, pp 12028-33. |