American Journal of Organic Chemistry
p-ISSN: 2163-1271 e-ISSN: 2163-1301
2024; 12(1): 1-19
doi:10.5923/j.ajoc.20241201.01
Received: Dec. 22, 2023; Accepted: Dec. 29, 2023; Published: Jan. 15, 2024

Zakaria Koulabiga 1, Kouadio Honoré Yao 2, Akoun Abou 2, Abdoulaye Djandé 1, Michel Giorgi 3, Stéphane Coussan 4
1Laboratory of Molecular Chemistry and Materials (LC2M), Research Team: Organic Chemistry and Phytochemistry, University Joseph KI-ZERBO, 03 BP 7021 Ouagadougou 03, Burkina Faso
2Department of Training and Research in Electrical and Electronic Engineering, Research Team: Instrumentation, Image and Spectroscopy, Felix Houphouet-Boigny National Polytechnic Institute, BP 1093 Yamoussoukro, Cote d’Ivoire
3Spectropole, Federation of Chemical Sciences, Marseille FR1739 Campus St. Jérôme, 52 av. Escadrille Normandie-Niemen, Marseille, France
4Laboratory: Physics of Ionic and Molecular Interactions (PIIM), Research Team H2M, UMR 7345, CNRS/Aix-Marseille University, Marseille, France
Correspondence to: Akoun Abou , Department of Training and Research in Electrical and Electronic Engineering, Research Team: Instrumentation, Image and Spectroscopy, Felix Houphouet-Boigny National Polytechnic Institute, BP 1093 Yamoussoukro, Cote d’Ivoire.
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This work is licensed under the Creative Commons Attribution International License (CC BY).
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This article deals with a combined experimental and computational study of a 6-substituted coumarin derivative, namely, 2-oxo-2H-chromen-6-yl 4-methoxybenzoate (I). The compound was synthetized by O-acetylation of 6-hydroxycoumarin with 4-methoxybenzoyl chloride in the presence of tetrahydrofuran as a solvent and triethylamine as a base. The crystal structure has a P21 space group and crystallizes in the monoclinic system with dimensions of 𝑎 = 3.8956 (4) Å, 𝑏 = 10.1366 (6) Å, and 𝑐 = 17.3178 (13) Å. The angles between the crystal axes are 𝛼 = 𝛾 = 90° and 𝛽 = 90.580 (7)°, with a 𝑍 value of 2. The compound was structurally characterized by both spectroscopy and single-crystal X-ray diffraction (XRD). In the latter, the structure of (I) was solved by direct methods and refined as a 2-component twin to a final R value of 0.0495 for 2966 independent reflections. The structure is stabilized by H-π and π-π stacking interactions between neighboring aromatic rings, as well as intra- and intermolecular C—H…O hydrogen bonds that extend along the [001] direction. The analysis of intermolecular interactions was conducted using dnorm and shape-index mappings. The results of this analysis highlighted the same interactions as those found by XRD analysis, namely C-H...O hydrogen bonds, H-π and π-π stacking interactions. As well, the two-dimensional fingerprint plots (FP) show specific close contacts between atom pairs and the contributions from different contacts. The largest contributions to the Hirshfeld surface, 34.9% and 33.3%, come from O···H/H…O and H···H contacts, respectively. In additionally, the molecular geometry of (I) was optimized using both ab initio method namely restricted Hartree-Fock (RHF) method and density functional theory (DFT/RB3LYP) with the 6-311++G(d, p) basis set in ground state. The outcomes of these quantum chemical calculations are consistent with the observed structure. The only reported difference concerns the Hartree-Fock calculations where the computed torsion angle between the coumarin ring system and the benzoate ring, C10—O3—C8—C9, of -85.6° is slightly larger than the observed value (−51.3 (8)°). Also, frequency calculations were carried out with the optimizing structures to perform vibrational analysis, check compound stability and obtain some thermodynamic parameters. Molecular orbital calculations providing electron-density plots of the HOMO and LUMO molecular orbitals were also performed with the frequency calculation methods using the same basis sets. The theoretical values of the HOMO-LUMO energy gap yielding from these calculations are 4.40 eV for (DFT/B3LYP/6–311++G(d,p)) and 9.77 eV for (RHF/6–311++G(d)) methods.
Keywords: 6-substituted coumarin derivative, Spectroscopic analysis, Crystal structure, Conformational analysis, Hirshfeld surface analysis, Quantum chemical calculations
Cite this paper: Zakaria Koulabiga , Kouadio Honoré Yao , Akoun Abou , Abdoulaye Djandé , Michel Giorgi , Stéphane Coussan , Synthesis, Characterization, Hirshfeld Surface Analysis and Quantum Chemical Calculations of 2-oxo-2H- Chromen-6-yl 4-Methoxybenzoate, American Journal of Organic Chemistry, Vol. 12 No. 1, 2024, pp. 1-19. doi: 10.5923/j.ajoc.20241201.01.
So, in the current experiment, a solution containing 4-methoxybenzoyl chloride (6.17 mmol; 0.7 mL) in dried tetrahydrofuran (30-40 mL) was employed. Subsequently, dried triethylamine (2.6 mL; 3 molar equivalents) and 6-hydroxycoumarin (6.17 mmol; 1 g) were added gradually over 30 minutes. The mixture was then refluxed for 4 hours and mixed with 40 mL of chloroform. The pH of the solution was adjusted to 2-3 by adding diluted hydrochloric acid. The organic layer underwent extraction, was washed with water until it reached neutrality, then dried over magnesium sulfate (MgSO4) before removal of the solvent. The resulting crude product was suction-filtered, washed with n-hexane, and recrystallized from chloroform. Colorless crystals of the title compound were obtained in a good yield: 87 %. Mp 452-454 K.![]() | Scheme 1. Numbering of carbon atoms used in spectra analysis. |
![]() | Figure 1. Electrospray ionization mass spectrum of the molecule |
![]() | Figure 2. 13C-NMR Spectrum of compound (I) |
![]() | Figure 3. Experimental 1H-NMR spectrum |
![]() | Figure 4. Experimental 13C (APT)-NMR spectrum |
![]() | Figures 5. Experimental HSQC spectra |
is close to 90°, or a is close to c [15]. In (I), the beta
value of 90.580(7)° clearly suggests a pseudo-merohedral twinning. Taking into account this molecular twinning in the refining process, including the twinning operator (l, -k, h) with the twinning fraction of 0.356(3), the crystallographic R1 indice (discrepancy index) decreases significantly from 0.28 to 0.0495, table 1.
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![]() | Figure 6. An ORTEP [9] view of the title compound with the atomic numbering scheme. Displacement ellipsoids are shown at the 50% probability level. Dashed lines indicate hydrogen bonds |
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![]() | Figure 7. Part of the crystal packing of the title compound showing the infinite 1D chain along [100]. Dashed lines indicate hydrogen bonds. H atoms not involved in hydrogen bonding have been omitted for clarity. |
![]() | Figure 8. A view of the crystal packing showing π–π stacking interactions (dashed lines). The green dots are ring centroids of rings |
![]() | Figure 9a. Hirshfeld surfaces mapped over dnorm (-0.117 to 1.324 a.u.) |
![]() | Figure 9b. Shape-index map (-1.000 to 1.000 a.u) |
![]() | Figure 9c. 2D plot showing the exact location of π–π stacking interactions |
![]() | Figure 10. Decomposed two-dimensional fingerprint plots for the title compound. Various close contacts and their relative contributions are indicated |
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![]() | Figure 11. DFT/B3LYP correlation graphic between the experimental and theoretical bond lengths in (Å) |
![]() | Figure 12. RHF correlation graphic between the experimental and theoretical bond lengths in (Å) |
![]() | Figure 13. DFT/B3LYP correlation graphic between the experimental and theoretical bond angles in (°) |
![]() | Figure 14. RHF correlation graphic between the experimental and theoretical bond angles in (°) |
![]() | Figure 15. Atom-by-atom superimposition of the X-ray structure (blue) on the calculated structure of (I), red, by (DFT/ B3LYP/6-311++G(d,p) |
![]() | Figure 16. Atom-by-atom superimposition of the X-ray structure (blue) on the calculated structure of (I), green, by RHF/6-311++G(d,p) |
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![]() | Figure 17. Correlation graphic between the experimental and theoretical DFT vibration frequencies (cm–1) |
![]() | Figure 18. Correlation graphic between the experimental and theoretical HF vibration frequencies (cm–1) |
![]() | Figure 19. DFT Calculated vibrational spectra of compound (I) |
![]() | Figure 20. DFT Calculated vibrational spectra of compound (I) |
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![]() | (1) |
![]() | Figure 21. MEP map (in atomic units) calculated using DFT/RB3LYP/6-311++G(d,p) and RHF/6-311++G(d,p) |
![]() | (2) |
![]() | (3) |
![]() | (4) |
![]() | (5) |
![]() | (6) |
![]() | (7) |
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![]() | Figure 22. The distributions and energy levels of the HOMO and LUMO orbitals computed for compound (I) |
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![]() | (8) |
![]() | (9) |
![]() | (10) |
![]() | (11) |
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![]() | Table 14. All β (a.u.) components and β ×10−30 (esu) values calculated using HF and DFT levels of theory |
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