American Journal of Mathematics and Statistics
p-ISSN: 2162-948X e-ISSN: 2162-8475
2012; 2(5): 129-138
doi: 10.5923/j.ajms.20120205.05
Pali Sen , Jacy R. Crosby
University of North Florida, Department of Mathematics and Statistics, FL. 32224, Jacksonville
Correspondence to: Pali Sen , University of North Florida, Department of Mathematics and Statistics, FL. 32224, Jacksonville.
| Email: | ![]() |
Copyright © 2012 Scientific & Academic Publishing. All Rights Reserved.
When performing analysis of individual data on the application of a particular drug, it is useful to study the within variability. But when two drugs are used in combination, it is of more interest to study any combination effects on the subjects. In this paper we consider a new analytical framework that is a combination of the individual and combined data analyses, based on an estimating equation approach. The proposed analyses utilize a stochastic model for a two-drug combination and derive the mean and the variance terms based on Ito’s calculus. The proposed estimation methods are used to estimate model parameters from both individual and combined data, and they provide the basis for model free synergy tests. The strength of the fit of the model to the data is examined by statistical measures and the graphical method. Simulation studies were performed to show the strengths of the proposed approach in estimating the model parameters. A synergy test of the model fitted by the individual subjects confirmed that the combination of the isomers under study is synergistic in nature.
Keywords: Drug Interactions, Stochastic Differential Equations, Isomers, Synergy
of the chemical in the system at time t can be modeled by a linear differential equation of the form ![]() | (1) |
is a positive constant that denotes the relative rate of elimination of the chemical from the body and
is a generally decreasing function. The model is based on one- compartment linear model with infusion. Kinetic models of this type have been extensively studied (see e.g. the book of[4], papers of[5],[6] and many other works). As pointed out in[7], the function
may be subject to random fluctuations from a variety of physical and physiological sources. This has led to the introduction of stochastic versions of the model (1), where the function
is assumed to contain a white noise component. In this case, equation (1) is more properly interpreted as a stochastic differential equation![]() | (2) |
is a Wiener process and
and
are deterministic functions. Models of this type have been studied in[7],[8],[9],[10],[11] and others. An important feature of these works is the calculation of the internal variability of the system as defined by the variance of the process
.The objective of this paper is to develop a stochastic model to study the nature of the interaction of two isomers, S and R, acting in combination on a single individual. We assume that the combined concentration is an a priori unknown linear combination of the two isomers. We determine this linear combination using a synergy test. The underlying methodology is as follows. The amounts of isomer S and isomer R in the system at any given time are assumed to follow diffusion processes
and
of the form (2), driven by the same Wiener process
. We further assume that the combined concentration
of the chemicals is given by the linear combination
of the two processes, for some values of
and
to be determined numerically. In Section 2, we give formulae for the mean and variance of the process
and identify the distribution of
as Gaussian. The dataset is described in section 3, followed by the description of the synergy test and the statistical methodologies in the subsequent sections. We present results in section 6 and a simulation study comparison in section 7. In Section 8, we provide the discussion of the findings.
of the isomer in the system follows a linear stochastic differential equation of the form![]() | (3) |
is the initial amount of isomer,
is its rate of absorption,
is a diffusion constant, and
is a standard Wiener process. The rates
,
, and the diffusion coefficient
are considered to be constants. We assume that the initial concentration
is zero. The following results will be needed in Section 6. Theorem 1. For each
, the random variable
has a Gaussian distribution with mean![]() | (4) |
![]() | (5) |
![]() | (6) |
for i =1, 2. Since the chemicals are acting simultaneously, we assume the equations for
and
are driven by the same noise process
. Set ![]() | (7) |
![]() | (8) |
denote the process![]() | (9) |
is Gaussian with a mean ![]() | (10) |
![]() | (11) |
and
are initial amounts,
and
are the rates of eliminations,
and
are the rates of absorptions for two chemicals.
and
represent the variability coefficients within each process, and
and
are two constants as used in equation (9). We refer the
and the
as the main parameters for the model,
as the variance parameters, and
as the synergy parameters.![]() | (12) |
is the dose (or concentration) of the ith drug given in a combination of n drugs and
is the dose (or concentration) of the ith drug given individually that would produce e, the magnitude of the combination concentration. If the value of the left-hand side of the equation (12) is less than 1, the effect is synergistic; if the effect is greater than 1, the effect is antagonistic. The equation (12) defines the theoretical, or more precisely, the e-theoretical line of dose additivity, where
lies on an e-isobole as in[14]. Here the authors describe the e-theoretical line as the line connecting the dose points of
to
. The e-isobole is the curve describing the different dose combinations between
and
. Depending on the position on the line, one can determine if the combination is synergistic or antagonistic. Their proposed method for establishing a sufficient condition for a synergy test uses an arbitrary line through
given by
where
is a given dose point.In the fixed ratio design, as in[15] of two drugs, individual compounds are combined together in amounts such that the proportion between them is constant. In other words for two levels of drugs we look at linear combinations of the form
or
, which must either be greater than, less than, or equal to 1. In the expression,
is a function of two drugs,
, and
are the functions of one drug in the absence of the other and r is the correlation coefficient that depends on the ratio of the combination of the two. For the synergy, we use the following tests,
for isomer S, for a specified value of r. A necessary condition for this hypothesis test is that the power for the specified value of r is at least 0.5. Also, since correlation is time dependent and expected to change as concentration combination changes, we establish a bound on r for significant results of the synergy tests for all subjects.
and
of the drug efficacies. We use individual data for later analyses where
and
are considered to be known constants. Akaike’s information criterion (AIC) is a useful statistic for statistical model evaluation and has been widely accepted in some areas of statistics, eg. See[16]. It is calculated for each selected model as AIC = (n)ln(SSE/n) + 2k , where k is the number of parameters to be estimated and SSE stands for sum of squared errors. A low value for AIC indicates a better fit as described in[17]. The value of AIC is computed after the convergence of the NLMIXED procedure. The value of AIC is calculated for NLIN procedure from the respective MSE values. As suggested in[18] we use the Wilcoxon Rank Test for the linear combination of hypotheses, that were described in the synergy test establishes a sufficient condition for rejecting the hypotheses at a .05 significance level. Since the distribution of the time data for each subject is unknown, the nonparametric min test is appropriate and widely used. We perform the power study using the WILCOX.TEST procedure in R for a simulation size of 5000 data sets. For the synergy hypotheses, we test seven pairs of hypotheses against one-sided alternatives, one pair per subject on each isomer type for combined and individual data. For model (9), using R software we generate 20,000 data sets for each patient using the estimated parameters from both the NLIN and NLMIXED procedures. We supply the initial estimates of the parameters, and use the NLS function to check the convergence of the model parameters to their initial values.
and
as given in Table 1. This capability is not available from the NLIN procedure.However, we use the individual data to estimate mean and variance parameters for seven subjects using both the NLIN and NLMIXED procedures. The results are presented in Tables 2 - 3, using the given coefficients of
and
from Table 1.
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![]() | Figure 1. Concentration versus time for individual subjects plotted with estimated curves by NLIN (dotted lines) and NLMIXED (solid lines) methods on the observed values |
and
. In Figure 2, we use the same line setup and place the correlation bounds to show the synergistic power and possible location for the dose combination of the data.
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![]() | Figure 2. A hypothetical isobologram with the estimated bounds for the correlation coefficient and the corresponding power is shown here. Note that the isobole curve represents only a sampling of the possible dose combinations |
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and
in the simulation to be consistent with the synergy test.In most cases in Tables 8 – 9 the estimates are very close to the true parameters in Tables 2 - 3. Differences shown in Tables 10-11 indicate that some of the variance
parameters were incorrectly estimated by the data, though the main parameter estimates were quite close. There was only one indication of a large difference that was detected by the simulation. Table 11, the NLMIXED difference table shows a large difference for two main parameter estimates for Subject 1.
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| [1] | R., O’Brien Straetemans,, T., Wouters, L., Van Dun, J., M Janicot, L. Bijnens, T. Burzykowski, M. Aerts, “Design and analysis of drug combination experiments,” Biometrical Journal, 47, 3, 299-308, 2005. |
| [2] | P. Feng, C. Kelly , “An extension of the model free test to test synergy in multiple drug combinations,” Biometrical Journal, 46, 3, 293-304, 2004 |
| [3] | P. Sen, D. Bell, “A model for the interaction of two chemicals,” Journal of Theoretical Biology, 238, 652-656, 2006. |
| [4] | J. A. Jacquez, J.A., Compartmental analysis in biology and medicine, Michigan: University of Michigan Press, 1985. |
| [5] | P. Sen, , D. Mohr, “A kinetic model for calcium distribution,” Journal of Theoretical Biology, 142, 179-188, 1990. |
| [6] | D. Krewski, R.T. Burnett, W. Ross, “Statistical foundations of pharmacokinetic modeling,” in New Trend in Pharmacokinetics, Volume 221, eds. A. Rescigno,,A.K. Thakur, New York: Plenum Press, 1991. |
| [7] | L. Ferrante, S. Bompadre, L. Leone, “A stochastic compartmental model with long lasting infusion,” Biometrical Journal, 45, 2, 182-194, 2003. |
| [8] | J. H. Matis, H.O. Hartley, “Stochastic compartmental analysis: model and least squares estimation from time series data,” Biometrics , 27, 77–102, 1971. |
| [9] | J.H. Matis, T.E. Wehrly, C.M. Metzler, (1983), “On some stochastic formulations and related statistical moments of pharmacokinetic models,” Journal of Pharmacokinetics & Biopharmaceutics, 11, 77–92, 1983. |
| [10] | J.H. Matis, “An introduction to stochastic compartmental models in pharmacokinetics,” in Pharmacokinetics, Mathematical and Statistical Approaches to Metabolism and Distribution of Chemicals and Drugs, eds. Pecile, A., Rescigno, A., New York: Plenum Press, 1988. |
| [11] | P. Sen, D. Bell, D. Mohr, D. “A calcium model with random absorption: a stochastic approach,” Journal of Theoretical Biology, 154, 485-493, 1992. |
| [12] | J. McMurry, Organic Chemistry, California: Brooks/Cole Publishing Company, 1988. |
| [13] | T.E. Bradstreet, "Favorite data sets from early phases of drug research - Part 2," Section on Statistical Education of the American Statistical Association, 219-223, 1992. |
| [14] | E. M. Laska, M. Meisner, C. Siegel, “Simple design and model-free tests for synergy,” Biometrics, 50, 834-841, 1994. |
| [15] | R. J. Tallarida, “ Drug synergism and dose-effect data analysis”, Florida: Chapman & Hall/CRC, 2000. |
| [16] | H. Bozdogan, “Model selection and Akaike’s information criterion (AIC): The general theory and its analytical extensions,” Psychometrika, 52, 3, 345-370, 1987. |
| [17] | P. Sen, “Model selection for a chemical inhibition process,” Calcutta Statistical Association Bulletin, 55, 109-118, 2004. |
| [18] | E.M.Laska, M. Meisner, “Testing whether an identified treatment Is best,” Biometrics, 45, 1139-1151, 1989. |